We are happy to announce that Compound Discoverer 3.5 has been released. You can download it from here. Here is an overview of some of the new capabilities in CD3.5:

• In-silico fragmentation (“FISh Scoring”) uses a new algorithm with increased coverage for negative ionization mode and increased speed of fragmentation.
• Apply PFAS Scoring node for PFAS prioritization.
• PFAS Plot shows the normalized mass defect (MD/C) versus normalized mass (m/C), with option for CF₂-transformed.
• The top-level Formulas table consolidates detected or predicted formulas from all annotation sources within a workflow.
• You can now export a Compounds table to the Thermo Scientific™ Chromeleon™ Chromatography Data System (CDS).
• You can now export a GC/EI Compounds table to Chromeleon.
• New targeted stable isotope labeling workflow
• The user interface now scales the font size used in most charts and views in CD.
• Internal Loss Search:
  – Lists & Libraries > Neutral Losses. New option to select neutral loss between the precursor and a fragment or between two fragments.
  – The Search Neutral Losses node now also reports internal loss.
• Added 17 neutral losses that are characteristic for PFAS
• and more.

For details, please see the Release Notes.