Quick Videos – CD 2.0
If the video is blurry please click the “HD” at the bottom of the panel to enable HD quality.
Here you can find short (<10 minutes), topic specific videos on specific features within Compound Discoverer. These videos include specific node-based descriptions, quick starts for making a new study or analysis, and tips for using the review pane. Videos with links are live and more will be added.
If you would like help on how to download Compound Discoverer from Flexnet, click here.
For new users, the “Getting Started” videos will give you a great overview of Compound Discoverer 2.0 while the Example Dataset videos will take you through the different examples showing how the Study was designed, how the Workflow was created, and how the Results can be investigated.
- Using the Pattern Tracer and Pattern Scoring Nodes
- Creating and Installing Mass Lists for the Search Mass List node
- Generating an Inclusion List for dd MS2 Reacquisition
- Compound Structure Elucidation Using Custom Explanations and FISh
- How to copy a structure and save as .mol file
- How to correlate UV peaks to MS peaks in CD
For higher quality when viewing the video in full screen mode (the button on the lower right of the video), depending on your browser and plug-ins, you may either:
- Select the “HD” option in the lower right corner.
- Right click and download (save) the video.
CD 2.0 Basics
The Nodes: Part 1 – Input/Output
The Nodes: Part 2 – Data Processing
The Nodes: Part 3 – Tracers
The Nodes: Part 4 – Expected Compounds
The Nodes: Part 5 – Unknown Compounds
The Nodes: Part 6 – Comparison & Statistics
The Nodes: Part 7 – Post-Processing Nodes
Metabolomics Example Data Set – ZDF
This dataset includes results from a study of Zucker rats with two groups, normal and ZDF (Zucker diabetic fatty). PCA and Differential Analysis (Volcano plot) results allow for the potential differences in metabolome profile between them and identification of components is demonstrated with mzCloud, ChemSpider, and Mass List search.
Metabolism Example Data Set
This dataset was acquired an a Fusion Tribrid mass spectrometer for human urine samples after oral dosing with omeprazole. It demonstrates the detection and identification of metabolites in timecourse samples by comparing with a pre-dose and investigating the time profile for metabolites in the samples.
Using the Pattern Tracer and Pattern Scoring Nodes
Creating and Installing Mass Lists for the Search Mass List node
Generating an Inclusion List for dd MS2 Reaquisition
Compound Structure Elucidation Using Custom Explanations and FISh
How to copy a structure and save as .mol file
Downloading Software from Flexnet