New Resources Page

New Resources page where you can download or view scientific posters, application notes and presentations highlighting the use of Compound Discoverer for various small molecule research applications.

New Tutorial Video on Connection to mzCloud

View the new quick tutorial video on how to copy a spectrum in Compound Discoverer and paste into mzCloud for compound ID.

New tutorial video on the example study

View the new tutorial video on the example study. The example study is located on the Compound Discoverer 1.0 software media. This video will walk you through setting up study, setting up a node based processing workflow, running analysis on a sample group, results review and generating report.

New tutorial quick video on the Filter Tool

View the new tutorial quick video on how to use the filter tool in results review. For example, use the filter tool to filter out peaks that only exist in the Control.

New Tutorial Quick Video

Check out the new tutorial quick video on how to process data by creating an analysis in Tutorials | Tutorial Quick Videos.

Welcome to Compound Discoverer

We’re excited to share the latest evolution of Thermo Fisher Scientific Compound Discoverer with the new version 2.1 (CD 2.1), our unique application for small molecule research applications in LC- HRAM MS. With Compound Discoverer 2.1 we’ve continued to improve and added even more capabilities for both “known parent” and “unknown parent” (untargeted) analysis.

In Compound Discoverer 2.1 we’ve added or improved features relevant to all applications.  Here’s just a few of the improvements or additions you’ll see in CD 2.1:

  • Easily generate potential transformation products from multiple starting compounds at once.
  • Addition of both Similarity searching and handling of stepped collision energy searching in mzCloud!
  • New normalization capabilities – Pooled QC Normalization.
  • Enhanced elemental composition calculation utilizing both very high resolution MS1 and MS/MS fragmentation data.
  • Better user control of compound annotation
  • Make better use of database matches with in silico fragmentation ranking of hits.
  • Connectivity to BioCyc for pathway visualization
  • Search local fragmentation spectral libraries in mzVault.

 

On this site, you will find several training and quick start videos to help you get going with Compound Discoverer 2.1 as well as options to provide feedback and get additional help with questions you may have.

 

– The Compound Discoverer Team